Published Papers - SUGIMOTO Naoki

Choline ion interactions with DNA atoms explain unique stabilization of A-T base pairs in DNA duplexes: A microscopic view

M. Nakano, H. Tateishi-Karimata, S. Tanaka and N. Sugimoto

J. Phys. Chem. B.   118   379 - 389   2014.01

Joint Work

DOI

Unusual-1 ribosomal frameshift cused by statble RNA G-quadruplex in open reading frame

T. Endoh and N. Sugimoto

Anal. Chem.   85   11435 - 11439   2013.12

Joint Work

DOI

Dissecting the contribution of thrombin exosite I in the recognition of thrombin binding aptamer

A. Pica, I. Russo Krauss, A. Merlino, S. Nagatoishi, N. Sugimoto and F. Sica

FEBS J.   280   6581 - 6588   2013.12

Joint Work

DOI

Effect of pressure on the stability of G-quadruplex DNA: Thermodynamics under crowding conditions

S. Takahashi and N. Sugimoto

Angew. Chem. Int. Ed.   52   13774 - 13778   2013.12

Joint Work

DOI

Translational halt during elongation caused by G-quadruplex formed by mRNA

T. Endoh, Y. Kawasaki and N. Sugimoto

Methods   64   73 - 78   2013.11

Joint Work

DOI

Study on Effects of Molecular Crowding on G-quadruplex-ligand Binding and Ligand-mediated Telomerase Inhibition

H. Yaku, T. Murashima, H. Tateishi-Karimata S. Nakano, D. Miyoshi and N. Sugimoto

METHODS   64   19 - 27   2013.11

Joint Work

DOI

Conformational changes of the phenyl and naphthyl isocyanate-DNA adducts during DNA replication and by minor groove binding molecules

S. Nakano, Y. Uotani, Y. Sato, H. Oka, M. Fujii and N. Sugimoto

Nucleic Acids Res   41   8581 - 8590   2013.10

Joint Work

DOI

Real-time monitoring of DNA hybridization kinetics at living cell surfaces

A. B. Rode, T. Endoh, H. Tateishi-Karimata, S. Takahashi and N. Sugimoto

Chem. Commun.   49   8444 - 8446   2013.10

Joint Work

DOI

Sequence and Solvent Effects on Telomeric DNA Bimolecular G-Quadruplex Folding Kinetics

A. Marchand, R. Ferreira, H. Tateishi-Karimata, D. Miyoshi, N. Sugimoto and V. Gabelica

J. Phys. Chem. B   117   12391 - 12401   2013.10

Joint Work

DOI

A highly sensitive telomerase activity assay that eliminates false-negative results caused by PCR inhibitors

H. Yaku, T. Murashima, D. Miyoshi and N. Sugimoto

Molecules   18   11751 - 11767   2013.09

Joint Work

DOI

Structural and Affinity Analyses of G-Quadruplex DNA Aptamers for Camptothecin Derivatives

H. Fujita, Y. Imaizumi, Y. Kasahara, S. Kitadume, H. Ozaki, M. Kuwahara, and N. Sugimoto

Pharmaceuticals   6   1082 - 1093   2013.08

Joint Work

DOI

Stability of RNA quadruplex in open reading frame determines proteolysis of human estrogen receptor α

T. Endoh, Y. Kawasaki and N. Sugimoto

Nucleic. Acids Research   41   6222 - 6231   2013.07

Joint Work

DOI

Multiple and cooperative binding of fluorescence light-up probe Thioflavin T with human telomere DNA G-quadruplex

V. Gabelica, R. Maeda, T.Fujimoto, H. Yaku, T. Murashima, N. Sugimoto and D. Miyoshi

Biochemistry, 52, 5620-5628   52   5620 - 5628   2013.06

Joint Work

DOI

Efficacy of Base-modification on Target Binding of Small Molecule DNA Aptamers

Y. Imaizumi, Y. Kasahara, S. Kitadume, H. Ozaki, T. Endoh, M. Kuwahara and N. Sugimoto

J. Am. Chem. Soc., 135, 9412-9419 (2013)   135   9412 - 9419   2013.06

Joint Work

DOI

Control of stability and structure of nucleic acids using cosolutes

H. Tateishi-Karimata and N. Sugimoto

Methods   67 ( 2 ) 151 - 158   2013.05

Joint Work

DOI

Suppression of Gene Expression by G-quadruplexes in Open Reading Frames Depends on G-quadruplex Stability

T. Endoh, Y. Kawasaki and N. Sugimoto

Angew. Chem. Int. Ed.   52   5522 - 5526   2013.05

Joint Work

DOI

Selection of RNAs for Constructing Lighting-UP Biomolecular Switches in Response to Specific Small Molecules

T. Endoh and N. Sugimoto

PLoS ONE, 8(3), e60222   8   2013.03

Single Work

DOI

Thermodynamics - Hydration Relationships within Loops that Affect G-Quadruplexes under Molecular Crowding Conditions

T. Fujimoto, S. Nakano, N. Sugimoto and D. Miyoshi

J. Phys. Chem. B (Highlighted as the cover)   117   963 - 972   2013.01

Joint Work

DOI

Construction of Artificial Peptides for Control of DNA G-quadruplex Structures Depending on Protease Activity toward Regulation of Protein Expression

A. Okada, K. Usui, M. Taniguchi, K. Kobayashi and N. Sugimoto

Peptide Science   2012   285 - 276   2013

Joint Work

A?T Base Pairs are More Stable Than G?C Base Pairs in a Hydrated Ionic Liquid

N. Sugimoto

Angew. Chem. Int. Ed.   51   1416 - 1419   2012

Single Work

DOI