Published Papers - SUGIMOTO Naoki

The affinity of molecular ions for DNA structures is determined by solvent accessible surface area

M. Nakano, H. Tateishi-Karimata, S. Tanaka, and N. Sugimoto

J. Phys. Chem. B   118 ( 32 ) 9583 - 9594   2014.08

Joint Work

DOI

In vitro assays predicting of telomerase inhibitory effect of G-quadruplex ligands in cell nuclei

H. Yaku, T. Murashima, D. Miyoshi and N. Sugimoto

J. Phys. Chem. B.   118 ( 10 ) 2605 - 2614   2014.03

Joint Work

DOI

Effects of Molecular Crowding on the Structures, Interactions, and Functions of Nucleic Acids

S. Nakano, D. Miyoshi, N. Sugimoto

Chem.Rev.   114 ( 5 ) 2733 - 2758   2014.03

Joint Work

DOI

New insights into transcription fidelity : thermal stability of non-cononical structures in template DNA regulates transcriptional arrest, pause, and slippage

H. Tateishi-Karimata, N. Isono and N. Sugimoto

PLoS ONE, DOI:10.1371   9 ( 3 ) e90580   2014.03

Joint Work

DOI

Comparable stability of Hoogsteen and Watson-Crick base pairs in ionic liquid choline dihydrogen phosphate

H. Tateishi-karimata, M. Nakano and N. Suigimoto

Sci. Rep.   4   3593   2014.01

Joint Work

DOI

Reduced Graphene Oxide Upconversion Nanoparticle Hybrid for Electrochemiluminescent Sensing of a Prognostic Indicator in Early-Stage Cancer

L. Wu, J. Wang, M. Yin, J. Ren, D. Miyoshi, N. Sugimoto and X. Qu

Small   10   330 - 336   2014.01

Joint Work

DOI

Choline ion interactions with DNA atoms explain unique stabilization of A-T base pairs in DNA duplexes: A microscopic view

M. Nakano, H. Tateishi-Karimata, S. Tanaka and N. Sugimoto

J. Phys. Chem. B.   118   379 - 389   2014.01

Joint Work

DOI

Unusual-1 ribosomal frameshift cused by statble RNA G-quadruplex in open reading frame

T. Endoh and N. Sugimoto

Anal. Chem.   85   11435 - 11439   2013.12

Joint Work

DOI

Dissecting the contribution of thrombin exosite I in the recognition of thrombin binding aptamer

A. Pica, I. Russo Krauss, A. Merlino, S. Nagatoishi, N. Sugimoto and F. Sica

FEBS J.   280   6581 - 6588   2013.12

Joint Work

DOI

Effect of pressure on the stability of G-quadruplex DNA: Thermodynamics under crowding conditions

S. Takahashi and N. Sugimoto

Angew. Chem. Int. Ed.   52   13774 - 13778   2013.12

Joint Work

DOI

Translational halt during elongation caused by G-quadruplex formed by mRNA

T. Endoh, Y. Kawasaki and N. Sugimoto

Methods   64   73 - 78   2013.11

Joint Work

DOI

Study on Effects of Molecular Crowding on G-quadruplex-ligand Binding and Ligand-mediated Telomerase Inhibition

H. Yaku, T. Murashima, H. Tateishi-Karimata S. Nakano, D. Miyoshi and N. Sugimoto

METHODS   64   19 - 27   2013.11

Joint Work

DOI

Conformational changes of the phenyl and naphthyl isocyanate-DNA adducts during DNA replication and by minor groove binding molecules

S. Nakano, Y. Uotani, Y. Sato, H. Oka, M. Fujii and N. Sugimoto

Nucleic Acids Res   41   8581 - 8590   2013.10

Joint Work

DOI

Real-time monitoring of DNA hybridization kinetics at living cell surfaces

A. B. Rode, T. Endoh, H. Tateishi-Karimata, S. Takahashi and N. Sugimoto

Chem. Commun.   49   8444 - 8446   2013.10

Joint Work

DOI

Sequence and Solvent Effects on Telomeric DNA Bimolecular G-Quadruplex Folding Kinetics

A. Marchand, R. Ferreira, H. Tateishi-Karimata, D. Miyoshi, N. Sugimoto and V. Gabelica

J. Phys. Chem. B   117   12391 - 12401   2013.10

Joint Work

DOI

A highly sensitive telomerase activity assay that eliminates false-negative results caused by PCR inhibitors

H. Yaku, T. Murashima, D. Miyoshi and N. Sugimoto

Molecules   18   11751 - 11767   2013.09

Joint Work

DOI

Structural and Affinity Analyses of G-Quadruplex DNA Aptamers for Camptothecin Derivatives

H. Fujita, Y. Imaizumi, Y. Kasahara, S. Kitadume, H. Ozaki, M. Kuwahara, and N. Sugimoto

Pharmaceuticals   6   1082 - 1093   2013.08

Joint Work

DOI

Stability of RNA quadruplex in open reading frame determines proteolysis of human estrogen receptor α

T. Endoh, Y. Kawasaki and N. Sugimoto

Nucleic. Acids Research   41   6222 - 6231   2013.07

Joint Work

DOI

Multiple and cooperative binding of fluorescence light-up probe Thioflavin T with human telomere DNA G-quadruplex

V. Gabelica, R. Maeda, T.Fujimoto, H. Yaku, T. Murashima, N. Sugimoto and D. Miyoshi

Biochemistry, 52, 5620-5628   52   5620 - 5628   2013.06

Joint Work

DOI

Efficacy of Base-modification on Target Binding of Small Molecule DNA Aptamers

Y. Imaizumi, Y. Kasahara, S. Kitadume, H. Ozaki, T. Endoh, M. Kuwahara and N. Sugimoto

J. Am. Chem. Soc., 135, 9412-9419 (2013)   135   9412 - 9419   2013.06

Joint Work

DOI