Published Papers - SUGIMOTO Naoki

A Turn-On Detection of DNA Sequences by Means of Fluorescence of DNA-Templated Silver Nanoclusters via Unique Interactions of a Hydrated Ionic Liquid

Y. Teng, H. Tateishi-Karimata, T. Tsuruoka, and N. Sugimoto

Molecules   23   2889   2018

Joint Work

Crowding Shifts the FMN Recognition Mechanism of Riboswitch Aptamer from Conformational Selection to Induced Fit

A. B. Rode, T. Endoh, and N. Sugimoto

Angew. Chem. Int. Ed.   57   6868 - 6872   2018  [Refereed]

Joint Work

Drastic stability change of X-X mismatch in d(CXG) trinucleotide repeat disorders under molecular crowding condition

Y. Teng, S. Pramanik, H. Tateishi-Karimata, T. Ohyama, and N. Sugimoto

Biochem. Biophys. Res. Commun.   496   601 - 607   2018  [Refereed]

Joint Work

DOI

Pursuing origins of (poly)ethylene glycol-induced G-quadruplex structural modulations

M. Trajkovski, T, Endoh, H. Tateishi-Karimata, T. Ohyama, S. Tanaka, J. Plavec and N. Sugimoto

Nucleic Acids Res.   46   4301 - 4315   2018  [Refereed]

Joint Work

Modulation of Ribozyme and Deoxyribozyme Activities Using Tetraalkylammonium Ions

S. Nakano, T. Watabe, and N. Sugimoto

Chem. Phys. Chem.   18   3614 - 3619   2017.11

Joint Work

Volumetric analysis of formation of the complex of G-quadruplex DNA with hemin using high pressure

S. Takahashi, S. Bhowmik and N. Sugimoto

Journal of Inorganic Biochemistry   166   199 - 207   2017  [Refereed]

Joint Work

Specific Light-Up System for Protein and Metabolite Targets Triggered by Initiation Complex Formation

H. Fujita, Y. Kataoka, R. Nagano, Y. Nakajima, M. Yamada, N. Sugimo, M. Kuwahara

Sci. Rep.   7 ( 15191 )   2017  [Refereed]

Joint Work

Topological impact of noncanonical DNA structures on Klenow fragment of DNA polymerase

S. Takahashi, J. A. Brazier, N. Sugimoto

Proc. Natl. Acad. Sci. U. S. A.   114   9605 - 9610   2017  [Refereed]

Joint Work

Unexpected Position-Dependent Effects of Ribose G‑Quartets in G‑Quadruplexes

J. Zhou, S. Amrane, F. Rosu, G.F. Salgado, Y. Bian, H. Tateishi-Karimata, E. Largy, D. N. Korkut, A. Bourdoncle, D. Miyoshi, J. Zhang, H. Ju, W. Wang, N. Sugimoto, V. Gabelica, and J. Mergny

J. Am. Chem. Soc.   139   7768 - 7779   2017  [Refereed]

Joint Work

Volumetric contributions of loop regions of G-quadruplex DNA to the formation of the tertiary structure

S. Takahashi, N. Sugimoto

Biophys. Chem.   231   146 - 154   2017  [Refereed]

Joint Work

Effects of metal ions and cosolutes on G-quadruplex topology

T. Fujii, P. Podbevšek, J. Plavec, N. Sugimoto

Journal of Inorganic Biochemistry   166   190 - 198   2017  [Refereed]

Joint Work

Newly characterized interaction stabilizes DNA structure: oligoethylene glycols

H.Tateishi-Karimata, T.Ohyama, T.Muraoka, P.Podbevsek, AM.Wawro, S.Tanaka, SI.Nakano, K.Kinbara, J.Plavec, N.Sugimoto

Nucleic Acids Res.   45   7021 - 7030   2017  [Refereed]

Joint Work

[Highlighted as a Front Cover]

Through-bond effects in the ternary complexes of throumbin sandwiched by two DNA aptamers

A. Pica, I. R. Krauss, V. Parente, H. Tateishi-Karimata, S. Nagatoishi, K. Tsumoto, N. Sugimoto and F. Sica

Nucleic Acids Res.   44   461 - 469   2017  [Refereed]

Joint Work

Model studies of the effects of intracellular crowding on nucleic acid interactions

S. Nakano, N. Sugimoto

Mol Biosyst.   13   32 - 41   2017  [Refereed]

Joint Work

Effects of trimethylamine N-oxide and urea on DNA duplex and G-quadruplex

Y. Ueda, Y. Zouzumi, A. Maruyama, S. Nakano, N. Sugimoto and D. Miyoshi

Science and Technology of Advanced Materials   17   753 - 759   2016.11  [Refereed]

Joint Work

tRNA Shifts the G-quadruplex-hairpin conformational equilibrium in RNA towards the hairpin conformer [Selected as an Inside Back Cover]

A.B. Rode, T. Endoh, N. Sugimoto

Angew. Chem. Int. Ed.   46   14315 - 14319   2016.11  [Refereed]

Joint Work

Thermal stability of RNA structures with bulky cations in mixed aqueous solutions

S. Nakano, Y. Tanino, H. Hirayama, N. Sugimoto

Biophysical Journal   111   1350 - 1360   2016.10  [Refereed]

Joint Work

G-quadruplexes with tetraethylene glycol-modified deoxythymidines are resistant to nucleases and inhibit HIV-1 reverse transcriptase

H. Tateishi-Karimata, T. Muraoka, K. Kinbara, N. Sugimoto

ChemBioChem.   17   1399 - 1402   2016.08  [Refereed]

Joint Work

Novel one-tube-one-step real-time methodology for rapid transcriptomic biomarker detection: signal amplification by ternary initiation complexes

H. Fujita, Y. Kataoka, S. Tobita, M. Kuwahara, N. Sugimoto

Anal. Chem.   88   7137 - 7144   2016.06  [Refereed]

Joint Work

Real-time monitoring of G-quadruplex formation during transcription

T. Endoh, AB Rode, S. Takahashi, Y. Kataoka, M. Kuwahara, N. Sugimoto

Anal. Chem.   88   1984 - 1989   2016.02  [Refereed]

Joint Work