Published Papers - SUGIMOTO Naoki

Destabilization of DNA G-quadruplexes by chemical environment changes during tumor progression facilitates transcription

H. Tateishi-Karimata, K. Kawauchi, and N. Sugimoto

J. Am. Chem. Soc.   140   642 - 651   2018  [Refereed]

Joint Work

[Highligted as a Supplementary Cover]

DOI

Crowding Shifts the FMN Recognition Mechanism of Riboswitch AptameConformational Selection to Induced Fi

A. B. Rode, T. Endoh, and N. Sugimoto

Angew. Chem. Int. Ed.     2018

Joint Work

An anionic phthalocyanine decreases NRAS expression by breaking down its RNA G-quadruplex

K. Kawauchi, W. Sugimoto, T. Yasui, K. Murata, K. Itoh, K. Takagi, T. Tsuruoka, K. Akamatsu, H. Tateishi-Karimata, N. Sugimoto, and D. Miyoshi

Nat. Commun.   9   2271   2018  [Refereed]

Joint Work

テトラエチレングリコールで修飾されたグアニン四重鎖の安定性の分子動力学計算による解析

大山達也, 建石寿枝, 田中成典, 杉本直己

日本核酸化学会誌   2   3 - 10   2018  [Refereed]

Joint Work

Co-Transcriptional Molecular Assembly Results in a Kinetically Controlled Irreversible RNA Conformational Switch

T. Endoh and N. Sugimoto

Anal. Chem.   90   11193 - 11197   2018  [Refereed]

Joint Work

Mirror-image Dependence: Targeting Enantiomeric G-quadruplex DNA by 10 Pairs of Triplex Metallohelices

C. Zhao, H. Song, P. Scott, A. Zhao, H. Tateishi-Karimata, N.Sugimoto, J. Ren, and X. Qu

Angew. Chem. Int. Ed.   57   15723 - 15727   2018  [Refereed]

Joint Work

A Turn-On Detection of DNA Sequences by Means of Fluorescence of DNA-Templated Silver Nanoclusters via Unique Interactions of a Hydrated Ionic Liquid

Y. Teng, H. Tateishi-Karimata, T. Tsuruoka, and N. Sugimoto

Molecules   23   2889   2018

Joint Work

Crowding Shifts the FMN Recognition Mechanism of Riboswitch Aptamer from Conformational Selection to Induced Fit

A. B. Rode, T. Endoh, and N. Sugimoto

Angew. Chem. Int. Ed.   57   6868 - 6872   2018  [Refereed]

Joint Work

Drastic stability change of X-X mismatch in d(CXG) trinucleotide repeat disorders under molecular crowding condition

Y. Teng, S. Pramanik, H. Tateishi-Karimata, T. Ohyama, and N. Sugimoto

Biochem. Biophys. Res. Commun.   496   601 - 607   2018  [Refereed]

Joint Work

DOI

Pursuing origins of (poly)ethylene glycol-induced G-quadruplex structural modulations

M. Trajkovski, T, Endoh, H. Tateishi-Karimata, T. Ohyama, S. Tanaka, J. Plavec and N. Sugimoto

Nucleic Acids Res.   46   4301 - 4315   2018  [Refereed]

Joint Work

Modulation of Ribozyme and Deoxyribozyme Activities Using Tetraalkylammonium Ions

S. Nakano, T. Watabe, and N. Sugimoto

Chem. Phys. Chem.   18   3614 - 3619   2017.11

Joint Work

Volumetric analysis of formation of the complex of G-quadruplex DNA with hemin using high pressure

S. Takahashi, S. Bhowmik and N. Sugimoto

Journal of Inorganic Biochemistry   166   199 - 207   2017  [Refereed]

Joint Work

Specific Light-Up System for Protein and Metabolite Targets Triggered by Initiation Complex Formation

H. Fujita, Y. Kataoka, R. Nagano, Y. Nakajima, M. Yamada, N. Sugimo, M. Kuwahara

Sci. Rep.   7 ( 15191 )   2017  [Refereed]

Joint Work

Topological impact of noncanonical DNA structures on Klenow fragment of DNA polymerase

S. Takahashi, J. A. Brazier, N. Sugimoto

Proc. Natl. Acad. Sci. U. S. A.   114   9605 - 9610   2017  [Refereed]

Joint Work

Unexpected Position-Dependent Effects of Ribose G‑Quartets in G‑Quadruplexes

J. Zhou, S. Amrane, F. Rosu, G.F. Salgado, Y. Bian, H. Tateishi-Karimata, E. Largy, D. N. Korkut, A. Bourdoncle, D. Miyoshi, J. Zhang, H. Ju, W. Wang, N. Sugimoto, V. Gabelica, and J. Mergny

J. Am. Chem. Soc.   139   7768 - 7779   2017  [Refereed]

Joint Work

Volumetric contributions of loop regions of G-quadruplex DNA to the formation of the tertiary structure

S. Takahashi, N. Sugimoto

Biophys. Chem.   231   146 - 154   2017  [Refereed]

Joint Work

Effects of metal ions and cosolutes on G-quadruplex topology

T. Fujii, P. Podbevšek, J. Plavec, N. Sugimoto

Journal of Inorganic Biochemistry   166   190 - 198   2017  [Refereed]

Joint Work

Newly characterized interaction stabilizes DNA structure: oligoethylene glycols

H.Tateishi-Karimata, T.Ohyama, T.Muraoka, P.Podbevsek, AM.Wawro, S.Tanaka, SI.Nakano, K.Kinbara, J.Plavec, N.Sugimoto

Nucleic Acids Res.   45   7021 - 7030   2017  [Refereed]

Joint Work

[Highlighted as a Front Cover]

Through-bond effects in the ternary complexes of throumbin sandwiched by two DNA aptamers

A. Pica, I. R. Krauss, V. Parente, H. Tateishi-Karimata, S. Nagatoishi, K. Tsumoto, N. Sugimoto and F. Sica

Nucleic Acids Res.   44   461 - 469   2017  [Refereed]

Joint Work

Model studies of the effects of intracellular crowding on nucleic acid interactions

S. Nakano, N. Sugimoto

Mol Biosyst.   13   32 - 41   2017  [Refereed]

Joint Work