Published Papers - SUGIMOTO Naoki

DNA structures under molecular crowding conditions with a phosphorylcholine derivative (MPC)

Y. Ueda, T. Konno, K. Ishihara, N. Sugimoto, D. Miyoshi

Transact. Mater. Res. Soc. Japan   40   99 - 102   2015.07  [Refereed]

Joint Work

Rational design and tuning of functional RNA switch to control an allosteric intermolecular interaction

T. Endoh and N. Sugimoto

Anal. Chem.   87   7628 - 7635   2015.07  [Refereed]

Joint Work

Loop nucleotides impact the stability of intrastrand i-motif structures at neutral pH

T. Fujii and N. Sugimoto

Phys. Chem. Chem. Phys.   17   16719 - 16722   2015.05  [Refereed]

Joint Work

DOI

A mRNA-responsive G-quadruplex-based drug release system.

H. Yaku, T. Murashima, D. Miyoshi, and N. Sugimoto

Sensors   15 ( 4 ) 9388 - 9403   2015.04  [Refereed]

Joint Work

DOI

i-motifs are more stable than G-quadruplexes in a hydrated ionic liquid

H. Tateishi-Karimata, M. Nakano, S. Pramanik, S. Tanaka, and N. Sugimoto

Chem. Commun.   51   6909 - 6912   2015.04

Joint Work

DNA sensor's selectivity enhancement and protection from contaminating nucleases due to a hydrated ionic liquid

H. Tateishi-Karimata, S. Pramanik, and N. Sugimoto

Analyst   140   4393 - 4398   2015.04  [Refereed]

Joint Work

[Highlighted as a Front Cover]

Control of guanine-rich DNA secondary structures depending on the protease activity using a designed PNA peptide

K. Usui, A. Okada, K. Kobayashi, N. Sugimoto

Org. Biomol.Chem.   13   2022 - 2025   2015.02  [Refereed]

Joint Work

A fluorescent probe for detection of an intracellular prognostic indicator in early-stage cancer

H. Ji, Y. Guan, L. Wu, J. Ren, D. Miyoshi, N. Sugimoto, and X. Qu

Chem. Commun.   51   1479 - 1482   2015.01  [Refereed]

Joint Work

Tuning Riboswitch-mediated Gene Regulation via Rational Control of Aptamer Ligand Binding Properties

A.B.Rode, T. Endoh, N. Sugimoto

Angew. Chem. Int. Ed.   54 ( 3 ) 905 - 909   2015.01

Joint Work

Structural foundation for DNA behavior in hydrated ionic liquid: An NMR study

M. Marušič, H. Tateishi-Karimata, N. Sugimoto, and J. Plavec

Biochimie   108   169 - 177   2015.01

Joint Work

Choline ions stabilize A-T base pairs by fitting into minor groove

M. Nakano, H. Tateishi-Karimata, S. Tanaka, and N. Sugimoto

JPS Conf. Proc.   5   011008   2015

Joint Work

DNA G-quadruplex detection system employing a protein fibril ligand

R. Maeda, H. Yaku, T. Nakabayashi, T. Murashima, N. Sugimoto, N. Ohta, D. Miyoshi

Telomere and Telomerase.   2 ( e691 )   2015  [Refereed]

Joint Work

Key tertiary interactions in FMN riboswitch aptamers required for ligand binding [Highlighted as a Selected Paper]

A.B. Rode, T. Endoh, and N. Sugimoto

Bull. Chem. Soc. Jpn.   88   946 - 948   2015  [Refereed]

Joint Work

Pressure-dependent formation of i-motif and G-quadruplex DNA structures

S. Takahashi and N. Sugimoto

Phys. Chem. Chem. Phys.   17   31004 - 31010   2015

Joint Work

Methyl substitution regulates the enantioselectivity of supramolecular complex binding to human telomeric G-Quadruplex DNA

B. Xu, C. Zhao, Y. Chen, H. Tateishi-Karimata, J. Ren, N. Sugimoto, and X. Qu

Chem. Eur. J.   20 ( 50 ) 16467 - 16472   2014.12

Joint Work

DOI

Organelle-Mimicking Liposome Dissociates G-quadruplexes and Facilitates Transcription

Smritimoy Pramanik, Hisae Tateishi-Karimata, Naoki Sugimoto

Nucleic Acids Research   42 ( 20 ) 12949 - 12959   2014.11

Joint Work

DOI

Drastic stabilization of parallel DNA hybridizations by a polylysine com-type copolymer with hydrophilic graft chain

Daisuke Miyoshi, Yumi Ueda, Naohiko Shimada, Shu-ichi Nakano, Naoki Sugimoto, Atsushi Maruyama

ChemMedChem   Sep;9 ( 9 ) 2156 - 2163   2014.09

Joint Work

DOI

Dangling ends perturb the stability of RNA duplex responsive to surrounding condition

H. Tateishi-Karimata, S. Pramanik, S. Nakano, D. Miyoshi and N. Sugimoto

ChemMedChem   Sep;9 ( 9 ) 2150 - 2155   2014.09

Joint Work

DOI

Aptamer-Based Universal Fluorometric Sensors Based on Allosteric Modulation of RNA-Peptide Interactions

T. Endoh, N. Sugimoto

ChemMedChem   Sep;9 ( 9 ) 2045 - 2048   2014.09

Joint Work

DOI

Roles of the amino group of purine bases in the thermodynamic stability of DNA base paring

S. Nakano, and N. Sugimoto

Molecules   19   11613 - 11627   2014.08  [Refereed]

Joint Work