Published Papers - SUGIMOTO Naoki
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Effects of trimethylamine N-oxide and urea on DNA duplex and G-quadruplex
Y. Ueda, Y. Zouzumi, A. Maruyama, S. Nakano, N. Sugimoto and D. Miyoshi
Science and Technology of Advanced Materials 17 753 - 759 2016.11 [Refereed]
Joint Work
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tRNA Shifts the G-quadruplex-hairpin conformational equilibrium in RNA towards the hairpin conformer [Selected as an Inside Back Cover]
A.B. Rode, T. Endoh, N. Sugimoto
Angew. Chem. Int. Ed. 46 14315 - 14319 2016.11 [Refereed]
Joint Work
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Thermal stability of RNA structures with bulky cations in mixed aqueous solutions
S. Nakano, Y. Tanino, H. Hirayama, N. Sugimoto
Biophysical Journal 111 1350 - 1360 2016.10 [Refereed]
Joint Work
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G-quadruplexes with tetraethylene glycol-modified deoxythymidines are resistant to nucleases and inhibit HIV-1 reverse transcriptase
H. Tateishi-Karimata, T. Muraoka, K. Kinbara, N. Sugimoto
ChemBioChem. 17 1399 - 1402 2016.08 [Refereed]
Joint Work
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Novel one-tube-one-step real-time methodology for rapid transcriptomic biomarker detection: signal amplification by ternary initiation complexes
H. Fujita, Y. Kataoka, S. Tobita, M. Kuwahara, N. Sugimoto
Anal. Chem. 88 7137 - 7144 2016.06 [Refereed]
Joint Work
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Real-time monitoring of G-quadruplex formation during transcription
T. Endoh, AB Rode, S. Takahashi, Y. Kataoka, M. Kuwahara, N. Sugimoto
Anal. Chem. 88 1984 - 1989 2016.02 [Refereed]
Joint Work
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Reevaluation of the stability of G-quadruplex structures under crowding conditions
J. Zhou, H. Tateishi-Karimata, JL Mergny, M. Cheng, Z. Feng, D. Miyoshi, N. Sugimoto, C. Li
Biochimie. 121 204 - 208 2016.02 [Refereed]
Joint Work
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Incorporation of O6-methylguanine restricts the conformational conversion of the human telomere G-quadruplex under molecular crowding conditions
A. Zhao, C. Zhao, H. Tateishi-Karimata, J. Ren, N. Sugimoto, X. Qu
Chem. Commum. 52 1903 - 1906 2016.01 [Refereed]
Joint Work
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Nucleobase-modified PNA suppresses translation by forming a triple helix with a hairpin structure in mRNA in vitro and in cells [Selected as a cover art]
T. Endoh, D. Hnedzko, E. Rozners, and N. Sugimoto
Angew. Chem. Int. Ed. 55 899 - 903 2016
Joint Work
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Expansion of the DNA 'alphabet' beyond natural DNA recognition
H. Tateishi-Karimata and N. Sugimoto
ChemBioChem 17 1301 - 1303 2016 [Refereed]
Joint Work
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Triplex-forming PNA modified with unnatural nucleobases: the role of protonation entropy in RNA binding
T. Endoh, C. Annoni, D. Hnedzko, E. Rozners, N. Sugimoto
Phys. Chem. Chem. Phys. 18 32002 - 32006 2016
Joint Work
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Pressure effect on the folding of G-quadruplex DNA modified with hexaethylene glycol
S. Takahashi and N. Sugimoto
Mol. Enz. Drug Targ. 2 3 2016 [Refereed]
Joint Work
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Local thermodynamics of the water molecules around single-and double-stranded DNA studied by grid inhomogeneous solvation theory
M. Nakano, H. Tateishi-Karimata, S. Tanaka, F. Tama, O. Miyashita, S. Nakano, N. Sugimoto
Chemical Physics Letters 660 250 - 255 2016 [Refereed]
Joint Work
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Use of a ureido-substituted deoxycytidine module for DNA assemblies
S. Nakano, H. Oka, M. Fujii and Sugimoto
Nucleosides Nucleotides Nucleic Acids 35 370 - 378 2016 [Refereed]
Joint Work
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Mechanical insights into ribosomal progression overcoming RNA G-quadruplex from periodical translation suppression in cells
T. Endoh, N. Sugimoto
Sci. Rep. 6 22719 2016 [Refereed]
Joint Work
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Triplex-forming peptide nucleic acid modified with 2-aminopyridine as a new tool for ditection of A-to-I editing [Selected as a Back Cover]
C. Annoni, T. Endoh, D. Hnedzko, E. Rozners, N. Sugimoto
Chem Commun (Camb) 52 7935 - 7938 2016 [Refereed]
Joint Work
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A reversible B-A transition of DNA duplexes induced by synthetic cationic copolymers
N. Yamaguchi, Y. Zouzumi, N. Shimada, S. Nakano, N. Sugimoto, A. Maruyama, D. Miyoshi
Chem Commun (Camb). 52 7446 - 7449 2016 [Refereed]
Joint Work
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Thermodynamic properties of water molecules in the presence of cosolute depend on DNA structure: a study using grid inhomogeneous solvation theory
M. Nakano, H. Tateishi-Karimata, S. Tanaka, F. Tama, O. Miyashita, S. Nakano, N. Sugimoto
Nucleic Acids Res. 43 10114 - 10125 2015.12 [Refereed]
Joint Work
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Effects of background anionic compounds on the activity of the hammerhead ribozyme in Mg(2+)-unsaturated solutions
S. Nakano, Y. Kitagawa, D. Miyoshi, and N. Sugimoto
J. Biol. Inorg. Chem. 20 1049 - 1058 2015.09
Joint Work
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Effects of cosolvents on the folding and catalytic activities of the hammerhead ribozyme
S. Nakano, Y. Kitagawa, H. Yamashita, D. Miyoshi, and N. Sugimoto
ChemBioChem. 16 1803 - 1810 2015.08
Joint Work