Published Papers - SUGIMOTO Naoki

Reevaluation of the stability of G-quadruplex structures under crowding conditions

J. Zhou, H. Tateishi-Karimata, JL Mergny, M. Cheng, Z. Feng, D. Miyoshi, N. Sugimoto, C. Li

Biochimie.   121   204 - 208   2016.02  [Refereed]

Joint Work

Incorporation of O6-methylguanine restricts the conformational conversion of the human telomere G-quadruplex under molecular crowding conditions

A. Zhao, C. Zhao, H. Tateishi-Karimata, J. Ren, N. Sugimoto, X. Qu

Chem. Commum.   52   1903 - 1906   2016.01  [Refereed]

Joint Work

Nucleobase-modified PNA suppresses translation by forming a triple helix with a hairpin structure in mRNA in vitro and in cells [Selected as a cover art]

T. Endoh, D. Hnedzko, E. Rozners, and N. Sugimoto

Angew. Chem. Int. Ed.   55   899 - 903   2016

Joint Work

Expansion of the DNA 'alphabet' beyond natural DNA recognition

H. Tateishi-Karimata and N. Sugimoto

ChemBioChem   17   1301 - 1303   2016  [Refereed]

Joint Work

Triplex-forming PNA modified with unnatural nucleobases: the role of protonation entropy in RNA binding

T. Endoh, C. Annoni, D. Hnedzko, E. Rozners, N. Sugimoto

Phys. Chem. Chem. Phys.   18   32002 - 32006   2016

Joint Work

Pressure effect on the folding of G-quadruplex DNA modified with hexaethylene glycol

S. Takahashi and N. Sugimoto

Mol. Enz. Drug Targ.   2   3   2016  [Refereed]

Joint Work

Local thermodynamics of the water molecules around single-and double-stranded DNA studied by grid inhomogeneous solvation theory

M. Nakano, H. Tateishi-Karimata, S. Tanaka, F. Tama, O. Miyashita, S. Nakano, N. Sugimoto

Chemical Physics Letters   660   250 - 255   2016  [Refereed]

Joint Work

Use of a ureido-substituted deoxycytidine module for DNA assemblies

S. Nakano, H. Oka, M. Fujii and Sugimoto

Nucleosides Nucleotides Nucleic Acids   35   370 - 378   2016  [Refereed]

Joint Work

Mechanical insights into ribosomal progression overcoming RNA G-quadruplex from periodical translation suppression in cells

T. Endoh, N. Sugimoto

Sci. Rep.   6   22719   2016  [Refereed]

Joint Work

Triplex-forming peptide nucleic acid modified with 2-aminopyridine as a new tool for ditection of A-to-I editing [Selected as a Back Cover]

C. Annoni, T. Endoh, D. Hnedzko, E. Rozners, N. Sugimoto

Chem Commun (Camb)   52   7935 - 7938   2016  [Refereed]

Joint Work

A reversible B-A transition of DNA duplexes induced by synthetic cationic copolymers

N. Yamaguchi, Y. Zouzumi, N. Shimada, S. Nakano, N. Sugimoto, A. Maruyama, D. Miyoshi

Chem Commun (Camb).   52   7446 - 7449   2016  [Refereed]

Joint Work

Thermodynamic properties of water molecules in the presence of cosolute depend on DNA structure: a study using grid inhomogeneous solvation theory

M. Nakano, H. Tateishi-Karimata, S. Tanaka, F. Tama, O. Miyashita, S. Nakano, N. Sugimoto

Nucleic Acids Res.   43   10114 - 10125   2015.12  [Refereed]

Joint Work

Effects of background anionic compounds on the activity of the hammerhead ribozyme in Mg(2+)-unsaturated solutions

S. Nakano, Y. Kitagawa, D. Miyoshi, and N. Sugimoto

J. Biol. Inorg. Chem.   20   1049 - 1058   2015.09

Joint Work

Effects of cosolvents on the folding and catalytic activities of the hammerhead ribozyme

S. Nakano, Y. Kitagawa, H. Yamashita, D. Miyoshi, and N. Sugimoto

ChemBioChem.   16   1803 - 1810   2015.08

Joint Work

DOI

DNA structures under molecular crowding conditions with a phosphorylcholine derivative (MPC)

Y. Ueda, T. Konno, K. Ishihara, N. Sugimoto, D. Miyoshi

Transact. Mater. Res. Soc. Japan   40   99 - 102   2015.07  [Refereed]

Joint Work

Rational design and tuning of functional RNA switch to control an allosteric intermolecular interaction

T. Endoh and N. Sugimoto

Anal. Chem.   87   7628 - 7635   2015.07  [Refereed]

Joint Work

Loop nucleotides impact the stability of intrastrand i-motif structures at neutral pH

T. Fujii and N. Sugimoto

Phys. Chem. Chem. Phys.   17   16719 - 16722   2015.05  [Refereed]

Joint Work

DOI

A mRNA-responsive G-quadruplex-based drug release system.

H. Yaku, T. Murashima, D. Miyoshi, and N. Sugimoto

Sensors   15 ( 4 ) 9388 - 9403   2015.04  [Refereed]

Joint Work

DOI

i-motifs are more stable than G-quadruplexes in a hydrated ionic liquid

H. Tateishi-Karimata, M. Nakano, S. Pramanik, S. Tanaka, and N. Sugimoto

Chem. Commun.   51   6909 - 6912   2015.04

Joint Work

DNA sensor's selectivity enhancement and protection from contaminating nucleases due to a hydrated ionic liquid

H. Tateishi-Karimata, S. Pramanik, and N. Sugimoto

Analyst   140   4393 - 4398   2015.04  [Refereed]

Joint Work

[Highlighted as a Front Cover]