Papers - KAWAKAMI Junji
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Construction of a trans-acting system of a L-histidine dependent ribozyme based on the secondary structure
S. Tanaka, Y. Yamaguchi, R. Takamine, and J. Kawakami
Proc. 39th Intl. Symp. Nucleic Acid Chemistry 234 - 235 2012.11
Joint Work
Authorship：Lead author
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Structure-function relationship of a histidine dependent ribozyme
Y. Yamaguchi, Y. Ishibashi, S. Tanaka, A. Tanigawa, I. Matsunaga, and J. Kawakami
Proc. 38th Intl. Symp. Nucleic Acids Chemistry 194 - 195 2011.11
Joint Work
Authorship：Lead author
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Triplet analysis that identifies unpaired regions of functional RNAs（共著） Reviewed
J. Kawakami, Y. Yamaguchi, and N. Sugimoto
Journal of Nucleic Acids 2011 doi:10.4061/2011/471843 2011.10
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Pyrrolidinyl peptide nucleic acid with α/β-peptide backbone - A conformationally constrained PNA with unusual hybridization properties Reviewed International coauthorship
C. Vilaivan, C. Srisuwannaket, C. Ananthanawat, C. Suparpprom, J. Kawakami, Y. Yamaguchi, Y. Tanaka, T. Vilaivan
Artificial DNA: PNA & XNA 2 11 2011
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Comparative thermodynamic analysis of RNA-protein interaction on surface and in solution（共著）
Y. Tanaka, K. Ishidate, K. Kishimoto, N. Sugimoto, and J. Kawakami
Proc. 37th Intl. Symp. Nucleic Acids Chemistry 276 - 277 2010.11
Joint Work
Authorship：Lead author
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Accurate curve fitting procedure for UV melting analysis of highly thermostable RNA hairpins（共著）
J. Kawakami, Y. Tanaka, and K. Kishimoto
Nucleic Acids Symp. Ser. 53 227 - 228 2009.9
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Recognition of a flipped base in a hairpinloop DNA by a small peptide （共著） Reviewed
J. Kawakami, S. Okabe, Y. Tanabe, and N. Sugimoto
Nucleoside, Nucleotides and Nucleic Acids 27 292 - 308 2008.2
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Functional role of the cofactor on activation process of L-histidine dependent ribozyme（共著）
J. Kawakami, C. Maiya, and N. Sugimoto
Nucleic Acids Symp. Ser. 50 241 - 242 2006.11
Joint Work
Authorship：Lead author
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A novel stable RNA pentaloop that interacts specifically with a motif peptide of lambda-N protein（共著） Reviewed
J. Kawakami, H. Tokitoh, Y. Tanabe, and N. Sugimoto
Nucleoside, Nucleotides and Nucleic Acids 25 397 - 416 2006.4
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Specific recognition of the basic N peptide by an RNA（共著）
J. Kawakami, H. Tokitoh, Y. Tanabe, and N. Sugimoto
Nucleic Acids Symposium Series 49 353 - 354 2005.9
Joint Work
Authorship：Lead author
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Thermodynamic analysis of duplex formation of the heterochiral DNA with L-deoxyadenosine（共著） Reviewed
J. Kawakami, K. Tsujita, and N. Sugimoto
Analytical Sciences 21 ( 2 ) 77 - 82 2005.2
Joint Work
Authorship：Lead author
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Introduction of peptide function into DNA by Nucleic Acid Peptides, NAPs（共著） Reviewed
J. Kawakami, Z.-M. Wang, H. Fujiki, S. Izumi, and N. Sugimoto
Chemistry Letters 33 ( 12 ) 1554 - 1555 2004.12
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Stabilization of a DNA duplex under molecular crowding conditions of PEG （共著）
H. Karimata, S. Nakano, T. Ohmichi, J. Kawakami, and N. Sugimoto
Nucleic Acids Symp. Ser. 48 107 - 108 2004.11
Joint Work
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Analysis of the secondary structure of a ribozyme that requires His as a cofactor（共著）
J. Kawakami, C. Maiya, and N. Sugimoto
Nucleic Acids Symp. Ser. 48 203 - 204 2004.11
Joint Work
Authorship：Lead author
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The effect of molecular crowding with nucleotide length and cosolute structure on DNA duplex stability（共著） Reviewed
S. Nakano, H. Karimata, T. Ohmichi, J. Kawakami, and N. Sugimoto
Journal of American Chemical Society 126 14330 - 14331 2004.10
Joint Work
DOI： 10.1021/ja0463029
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Novel biomaterials derived from deoxyribozyme and NAPzyme Reviewed
Y. Okumoto, H. Fujiki, J. Kawakami, S. Nakashima, S. Nakano, T. Ohmichi, D. Miyoshi and N. Sugimoto
Macromol. Chem. Phys., Macromol. Symp. 201 245 - 252 2003
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A Stable DNA Tetraloop and Its Structural Tolerance for Modification Reviewed
KAWAKAMI Junji, YONEYAMA Mari, MIYOSHI Daisuke, SUGIMOTO Naoki
Chemistry Letters 2001 ( 3 ) 258 - 259 2001.3
Publisher：The Chemical Society of Japan
Structural features of a stable hairpin DNA with a tetraloop, dAGGC(TTCG)GCCT (CORE), and its six abasic mutants were investigated by the melting behavior of the UV absorption and circular dichroism spectra. The CORE and an abasic mutant at the second position of the loop exhibit considerable thermodynamic stability and have similar structural features suggesting the same folding with an identical base orientation of the two hairpin DNAs except for the second base in the loop.
DOI： 10.1246/cl.2001.258
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Utilization of ribozymes for loss-of-function analyses of the early development of the ascidian Ciona intestinalis
M. Katano, A. Yamada, K. J. Tanaka, A. Murakami, K. Taira, J. Kawakami, N. Sugimoto and T. Nishikata
Mem. Konan Univ., Sci. Eng. Ser. 48 11 - 20 2001
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Thermodynamic stability of base pairs between 2-hydroxyadenine and incoming nucleotides as a determinant of nucleotide incorporation specificity during replication Reviewed
J. Kawakami, H. Kamiya, K. Yasuda, H. Fujiki, H. Kasai and N. Sugimoto
Nucleic Acids Research 29 3289 - 3296 2001
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In vitro selection of aptamers that act with Zn2+ Reviewed
J. Kawakami, H. Imanaka, Y. Yokota and N. Sugimoto
J. Inorg. Biochem. 82 197 - 206 2000