Papers - ENDOH Tamaki
-
Co-transcriptional molecular assembly results in a kinetically controlled irreversible RNA conformational switch Reviewed
Endoh T. and Sugimoto N.
Anal. Chem. 90 ( 19 ) 11193 - 11197 2018.10
-
Pursuing origins of (poly)ethylene glycol-induced G-quadruplex structural modulations Reviewed International coauthorship
M. Trajkovski,* T, Endoh,* H. Tateishi-Karimata, T. Ohyama, S. Tanaka, J. Plavec and N. Sugimoto [* Equal contribution]
46 4301 - 4315 2018.5
-
Cotranslational protein assembly imposes evolutionary constraints on homomeric proteins Reviewed International coauthorship
E. Natan, T. Endoh, L. Haim-Vilmovsky, T. Flock, G. Chalancon, J. T. S. Hopper, B. Kintses, P. Horvath, L. Daruka, G. Fekete, C. Pál, B. Papp, E. Oszi, Z. Magyar, J. A. Marsh, A. H. Elcock, M. N. Babu, C. V. Robinson, N. Sugimoto, and S. A. Teichmann
25 279 - 288 2018.3
Joint Work
-
Synthetic Chlorophyll-A Derivatives Stabilize DNA G-Quadruplex Structures
Nagano Yasunobu, Endoh Tamaki, Ogasawara Shin, Sugimoto Naoki, Tamiaki Hitoshi
BIOPHYSICAL JOURNAL 114 ( 3 ) 599A 2018.2
Joint Work
-
Crowding Shifts the FMN Recognition Mechanism of Riboswitch Aptamer from Conformational Selection to Induced Fit Reviewed
A. B. Rode, T. Endoh, and N. Sugimoto
2018
Joint Work
-
Conformational Dynamics of mRNA in Gene Expression as New Pharmaceutical Target Invited Reviewed
T. Endoh and N. Sugimoto
17 ( 9 ) 817 - 832 2017.9
-
tRNA Shifts the G-quadruplex–Hairpin Conformational Equilibrium in RNA towards the Hairpin Conformer Reviewed
A. B. Rode, T. Endoh, and N. Sugimoto
Angew. Chem. Int. Ed. 55 14315 - 14319 2016.11
Joint Work
-
Triplex-forming PNA modified with unnatural nucleobases: the role of protonation entropy in RNA binding Reviewed International coauthorship
T. Endoh, C. Annoni, D. Hnedzko, E. Rozners, and N. Sugimoto
Phys. Chem. Chem. Phys. 18 32002 - 32006 2016.11
-
Correction: Triplex-forming peptide nucleic acid modified with 2-aminopyridine as a new tool for detection of A-to-I editing. International coauthorship
Annoni C, Endoh T, Hnedzko D, Rozners E, Sugimoto N
Chemical communications (Cambridge, England) 52 ( 91 ) 13417 - 13418 2016.11
-
Triplex-forming peptide nucleic acid modified with 2-aminopyridine as a new tool for detection of A-to-I editing Reviewed International coauthorship
Annoni C, Endoh T, Hnedzko D, Rozners E, Sugimoto N
52 7935 - 7938 2016.6
Joint Work
DOI： 10.1039/C6CC02164F
-
Site-specific control of silica mineralization on DNA using a designed peptide Reviewed
Ozaki M, Nagai K, Nishiyama H, Tsuruoka T, Fujii S, Endoh T, Imai T, Tomizaki KY, Usui K
Chem. Commun. 52 ( 21 ) 4010 - 4013 2016.3
Joint Work
DOI： 10.1039/c5cc07870a
-
Mechanical insights into ribosomal progression overcoming RNA G-quadruplex from periodical translation suppression in cells Reviewed
Endoh T, Sugimoto N
Sci. Rep. 6 22719 2016.3
-
Real-time monitoring of G‑quadruplex formation during transcription Reviewed
Endoh T, Rode AB, Takahashi S, Kataoka Y, Kuwahara M, Sugimoto N
Anal. Chem. 88 ( 4 ) 1984 - 1989 2016.2
-
Nucleobase-modified PNA suppresses translation by forming a triple helix with a hairpin structure in mRNA in vitro and in cells Reviewed International coauthorship
Endoh T, Hnedzko D, Rozners E, Sugimoto N
Angew. Chem. Int. Ed. 55 ( 3 ) 899 - 903 2016.1
-
Rational design and tuning of functional RNA switch to control an allosteric intermolecular interaction Reviewed
Endoh T, Sugimoto N
Anal. Chem. 87 7628 - 7635 2015.8
-
Key tertiary interactions in FMN riboswitch aptamers required for ligand binding Reviewed
Rode A B, Endoh T, Sugimoto N
Bull. Chem. Soc. Jpn. 88 946 - 948 2015.7
Joint Work
-
Tuning riboswitch-mediated gene regulation by rational control of aptamer ligand binding properties Reviewed
Rode A B, Endoh T, Sugimoto N
Angew. Chem. Int. Ed. 54 905 - 909 2015.1
Joint Work
-
Aptamer-based universal fluorometric sensors based on allosteric modulation of RNA–peptide Interactions Reviewed
Endoh T, Sugimoto N
ChemMedChem 9 2045 - 2048 2014.9
-
Unusual −1 ribosomal frameshift caused by stable RNA G-quadruplex in open reading frame Reviewed
Endoh T, Sugimoto N
Anal. Chem., 85 11435 - 11439 2013.12
Joint Work
Authorship：Lead author
-
Unusual-1 Ribosomal Frameshift Caused by Stable RNA G-Quadruplex in Open Reading Frame
Tamaki Endoh, Naoki Sugimoto
ANALYTICAL CHEMISTRY 85 ( 23 ) 11435 - 11439 2013.12
Joint Work
Authorship：Lead author Publisher：AMER CHEMICAL SOC
Tertiary structures formed by mRNAs impact the efficiency of the translation reaction. Ribosomal frameshift is a well-characterized recoding process that occurs during translation elongation. Pseudoknot and stem-loop structures may stimulate frameshifting by causing a translational halt at a slippery sequence. In this study, we evaluated the efficiency of an unusual 1 frameshift caused by a noncanonical RNA G-quadruplex structure in mammalian cells. The reporter gene construct consisting of a fluorescent protein and Luciferase enabled evaluation of apparent and absolute values of the 1 frameshift efficiency and revealed significant increase of the efficiency by G-quadrupex forming potential sequence. In addition, berberine, a small molecule that binds to and stabilizes G-quadruplex structures, further increased the frameshift efficiency. These results indicate that the stable G-quadruplex structure stimulates the unusual -1 frameshift and has a potential to regulate the frameshift with its ligand.
DOI： 10.1021/ac402497x