Papers - NAKANO Shuuichi
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Thermodynamic properties of water molecules in the presence of cosolute depend on DNA structure: a study using grid inhomogeneous solvation theory Reviewed
M. Nakano, H. Tateishi-Karimata, S. Tanaka, F. Tama, O. Miyashita, S. Nakano, and N. Sugimoto
Nucleic Acids Res. 43 10114 - 10125 2015.11
Joint Work
DOI： 10.1093/nar/gkv1133
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Effects of background anionic compounds on the activity of the hammerhead ribozyme in Mg2+-unsaturated solutions Reviewed
S. Nakano, Y. Kitagawa, D. Miyoshi, and N. Sugimoto
J. Biol. Inorg. Chem 20 ( 6 ) 1049 - 1058 2015.7
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Effects of cosolvents on the folding and catalytic activities of the hammerhead ribozyme Reviewed
S. Nakano, Y. Kitagawa, H. Yamashita, D. Miyoshi, and N. Sugimoto
ChemBioChem 16 ( 12 ) 1803 - 1810 2015.7
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Preparation of hydrogels for the study of the effects of spatial confinement on DNA Reviewed
S. Nakano, M. Yoshida, D. Yamaguchi, and N. Sugimoto
Trans. Mat. Res. Soc. Jpn. 39 435 - 438 2014.12
Joint Work
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Roles of the amino group of purine bases in the thermodynamic stability of DNA base pairing Reviewed
S. Nakano and N. Sugimoto
Molecules 19 ( 8 ) 11613 - 11627 2014.8
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Dangling ends perturb the stability of RNA duplexes responsive to surrounding conditions Reviewed
H. Tateishi-Karimata, S. Pramanik, S. Nakano, D. Miyoshi, and N. Sugimoto
ChemMedChem 9 ( 9 ) 2150 - 2155 2014.7
Joint Work
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Hammerhead ribozyme activity and oligonucleotide duplex stability in mixed solutions of water and organic compounds Reviewed
S. Nakano, Y. Kitagawa, D. Miyoshi, N. Sugimoto
FEBS Open Bio 4 643 - 650 2014.7
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Drastic stabilization of parallel DNA hybridizations by a polylysine comb-type copolymer with hydrophilic graft chain Reviewed
D. Miyoshi, Y. Ueda, N. Shimada, S. Nakano, N. Sugimoto, and A. Maruyama
ChemMedChem 9 ( 9 ) 2156 - 2163 2014.7
Joint Work
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Effects of molecular crowding on the structures, interactions, and functions of nucleic acids Reviewed
S. Nakano, D. Miyoshi, and N. Sugimoto
Chem. Rev. 114 2733 - 2758 2014.3
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Conformational changes of the phenyl and naphthyl isocyanate-DNA adducts during DNA replication and by minor groove binding molecules Reviewed
S. Nakano, Y. Uotani, Y. Sato, H. Oka, M. Fujii, and N. Sugimoto
Nucleic Acids Res. 41 8581 - 8590 2013.7
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Quantitative analyses of nucleic Acid stability under the molecular crowding condition induced by cosolutes Invited Reviewed
Tateishi-Karimata H, Nakano S, Sugimoto N.
Curr Protoc Nucleic Acid Chem. Chapter 7 Unit7.19 2013.6
Joint Work
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Study on effects of molecular crowding on G-quadruplex-ligand binding and ligand-mediated telomerase inhibition
H. Yaku, T. Murashima, H. Tateishi-Karimata, S. Nakano, D. Miyoshi, and N. Sugimoto
Methods S1046-2023 ( 13 ) 00097-2 2013.4
Joint Work
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Thermodynamics-hydration relationships within loops that affect G-quadruplexes under molecular crowding conditions Reviewed
T. Fujimoto, S. Nakano, N. Sugimoto, and D. Miyoshi
J. Phys. Chem. B 117 ( 4 ) 963 - 972 2013.1
Joint Work
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Base-pairing selectivity of a ureido-linked phenyl-2'-deoxycytidine derivative Reviewed
Nakano S, Oka H, Yamaguchi D, Fujii M, Sugimoto N.
Org Biomol Chem 10 ( 48 ) 9664 - 9670 2012.12
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The beads-on-a-string structure of long telomeric DNAs under molecular crowding conditions Reviewed
Yu H, Gu X, Nakano S, Miyoshi D, Sugimoto N.
J Am Chem Soc. 134 ( 49 ) 20060 - 20069 2012.12
Joint Work
DOI： 10.1021/ja305384c
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Mechanistic study on microstructural tuning of metal nanoparticle/polymer composite thin layers: Hydrogenation and decomposition of polyimide matrices catalyzed by embedded nickel nanoparticles. Reviewed
K. Akamatsu, M. Fujii, T. Tsuruoka, S. Nakano, T. Murashima, and H. Nawafune
J. Phys. Chem. C 116 17947 - 17954 2012.8
Joint Work
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Dimerization of nucleic acid hairpins in the conditions caused by neutral cosolutes Reviewed
S. Nakano, H. Hirayama, D. Miyoshi, and N. Sugimoto
J. Phys. Chem. B 116 ( 25 ) 7406 - 7415 2012.6
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Hydration changes upon DNA folding studied by osmotic stress experiments Reviewed
S. Nakano, D. Yamaguchi, H. Tateishi-Karimata, D. Miyoshi, and N. Sugimoto
Biophys. J. 102 ( 12 ) 2808 - 2817 2012.5
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The effects of molecular crowding on the structure and stability of G-quadruplexes with an abasic site Invited Reviewed
T. Fujimoto, S. Nakano, D. Miyoshi, and N. Sugimoto
Journal of Nucleic Acids (Hindawl Publishing Corporation) 2011 ( 857149 ) 857149 2011.9
Joint Work
DOI： 10.4061/2011/857149
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Measurements of the binding of a large protein using a substrate density-controlled DNA chip Reviewed
S. Nakano, T. Kanzaki, M. Nakano, D. Miyoshi, and N. Sugimoto
Anal. Chem. 83 ( 16 ) 6768 - 6372 2011.8